… Further investigation revealed that bacteriorhodopsin … re-protonation via proton donor Asp-96
in the N560 intermediate. … 52-1 heliorhodopsin (TaHeR), studied in this thesis, is a member …

… However, even well-studied bacteriorhodopsin is not … proton pumping rhodopsins,96 such
as Archaerhodopsin 1 (… corresponding residues in sodium ion pumps are known as Asn, Asp, …

… the intermediates of rhodopsin's photocycle, using time-… ; therefore, it is hard to illustrate
every single residue's effect … to initiate new projects and work independently. He helped me to …

… and most significant residue identified in this study that sustained … annotation as
bacteriorhodopsin-like proteins was the pres… of key Asp and Thr residues, and a slower photocycle …

… at positions 85, 96, 115 and 212 were replaced by Asn and Glu … of Tyr [37], Pro [206], Leu
[232] and Trp [1,205] residues as … changes during the bacteriorhodopsin photocycle. A Fourier …

… T-89, and D-96 in bacteriorhodopsin are highlighted by orange … The common ancestor to
the sequences used in this study … In contrast, the Asn-Asp-Gln (NDQ) motif of Na+ pumping …

… an ionized state in unphotolyzed bacteriorhodopsin (BR) and … residue at position 105 for the
highly conserved Leu or Ile … state of the retinal[90,93,96]. The similarity in the intensity of the …

… the study of the prototypical proton pump, bacteriorhodopsin … Several (though not all) double
mutations which removed the … (B) Crystal structure of BR, showing Asp-85 and Asp-96, the …

… in an ionized state in unphotolyzed bacteriorhodopsin (BR) and … Significant differences exist
in the photocycle and protonation… residue at position 105 for the highly conserved Leu or Ile …

… , like the Asp in position 96 in bacteriorhodopsin” and serves … from Asp to Asn and proton
uptake position from typical Asp to Gln… leastsquares fitting program MEXFIT (93). The number of …